I suppose by "alternator or battery tester" it is meant a simple voltmeter.
I very highly doubt that Sensor is tracking capacity flow both directions and cuts of charging based on that data. Even advanced lithium batteries which require serious monitoring don't do that.
So let's say charging it on terminals shouldn't influence the sensor, which is highly probable is only monitoring the voltage.
I suspect you can't overcharge the battery with properly functioning alternator which won't feed more than max 14,4 volts and the current flow will simply level.
The only reason for connecting negative last and on the body is known to prevent the sparks which can ignite the gasses from the battery.